Ahh that makes me a sad panda but I totally understand, Prophesy of Pendor(mispelled on purpose) a mod for M&B introduces a mechanic where if a prisoner is over a certain level they couldn't be recruited to the party. I think Starsector could make use of that same concept except using Ordinance points instead of Level to determine who's boardable and who's not. Although with my limited scripting knowledge I have no idea how to write such a script.
One other thing Okim if you have the time, what do the numbers in [,] next to ships in the .faction files? I went ahead and added in the rockfly and Dreadnaught just for fun, but as they weren't in there before I have no idea what to put in those brackets. I just put [0, 1] for now. I put the Dreadnaught with the RSF System Defense fleet, making that fleet even meaner. I added the rockflies as a special Alien fleet, instead of scouts, abductors, and motherships there is now also rockflies
I have no plans to add them to my fleet, just wanted to face off against them with my super ISA fleet.