Slight issue with how your mods are packaged: You've got an extra folder between the main mod folder and the archive.
Example from your mods: .zip > "[0.95]Cari UI Lite 1.0.3" > "Cari UI Lite" > mod files
How most other mods do it: .zip > "Cari UI Lite" > mod files
With the setup that other mods use you can just extract their archives directly into the "mods" folder, and they'll be picked up by the game. With your mods the extra folder prevents the mod from showing up, as Starsector doesn't seem to like nested folders there. Manually dragging out the "Cari UI Lite" folder works fine, but this is easy to overlook if you're extracting a bunch of mod archives at the same time.
(thanks for making these, looking forward to trying Lite now that I've got it loading)
