Yes that seems to be what happened, the ship was in the market at Jengala (Jangala? I can't remember which right now, I haven't been sleeping well lately
), but I could not find a way to just add it in to my fleet in any way it was simply available for purchase at the planet my agent was sited on when she embarked on the mission. The message that was created when my agent completed her mission said she 'bought' the ship (at Coatl) and moved it to Jengala, which confused me because the price was certainly enough to literally just buy it.
The service of finding the ship is definitely worth something, I just didn't think discovering where it was and bringing that particular model of ship to a port of my choosing would cost so much on its own.
I am sorry if I came across pretty rude in my previous post, I was feeling pretty burnt at that moment. I do really appreciate the work you've done to expand upon the game, Nexelerin is quite an impressive mod and I've enjoyed it a lot over the years. The situation wasn't really even as bad as it felt at the time, my character still advanced in a few ways from the time I spent grinding on pirates anyway, even if he did end up spending a bit more for his first capital ship than I expected to.
UPDATE! - Okay it's been awhile since I played and I didn't see where the 'storage' button on the ship buy screen! So I guess now it turns out I have two of this ship!
Sheesh, sorry for the confusion and salt! Sorry for the salt either way but also I was just puzzled by the regular game interface.