Good evening from Japan!
I am reporting the conflicts with some mods. I am helping you find the bugs, in order, to allow this awesome mod to work with any other mods. When I run Shadowyards mod (This mod is one of my favorite), I got CTD'd to the desk with the following messages:
Fatal: index: 0, Size: 0
Here are the following mods I enabled in Starsector 0.9a:
Another Portrait Pack
Arsenal Expansion 1.5
Audio Plus
Combat Chatter
CombatAnalytics
Common Radar
Console Commands
DIABLEAVIONICS
Kadur Remnant
LazyLib
Leading Pip
Lightshow
MagicLib
ORA
Portrait pack
PracticeTargets
Shadowyards
UnknownSkies
UpgradedRotaryWeapons
Version Checker
Here are information from log:
22324 [Thread-4] INFO com.fs.graphics.TextureLoader - Cleaned buffer for texture graphics/shadow_ships/ships/ms_potniaBis.png (using cast)
22326 [Thread-4] INFO com.fs.graphics.TextureLoader - Cleaned buffer for texture graphics/da/ships/diableavionics_fractus.png (using cast)
22349 [Thread-4] INFO com.fs.graphics.TextureLoader - Cleaned buffer for texture graphics/ships/stations/module_medium_pd1.png (using cast)
22382 [Thread-4] INFO com.fs.graphics.TextureLoader - Cleaned buffer for texture graphics/ships/mercury/mercury_substandard.png (using cast)
22393 [Thread-4] INFO com.fs.graphics.TextureLoader - Cleaned buffer for texture graphics/shadow_ships/ships/seski/ms_seski_L.png (using cast)
22393 [Thread-4] INFO com.fs.graphics.TextureLoader - Cleaned buffer for texture graphics/ships/wasp_ftr.png (using cast)
22797 [Thread-4] ERROR com.fs.starfarer.combat.CombatMain - java.lang.IndexOutOfBoundsException: Index: 0, Size: 0
java.lang.IndexOutOfBoundsException: Index: 0, Size: 0
at java.util.ArrayList.rangeCheck(Unknown Source)
at java.util.ArrayList.get(Unknown Source)
at com.fs.starfarer.loading.scripts.ScriptStore.?0000(Unknown Source)
at com.fs.starfarer.settings.StarfarerSettings.super(Unknown Source)
at com.fs.starfarer.launcher.ModManager.getEnabledModPlugins(Unknown Source)
at com.fs.starfarer.loading.ResourceLoaderState.init(Unknown Source)
at com.fs.state.AppDriver.begin(Unknown Source)
at com.fs.starfarer.combat.CombatMain.main(Unknown Source)
at com.fs.starfarer.StarfarerLauncher$1.run(Unknown Source)
at java.lang.Thread.run(Unknown Source)
Hopes this helps. If it is my fault for installing certain mods that conflict with shadowyards, then I apologize for that. At least I am re-learning about detecting the conflicts between mods.