The AI better at ships that require you to pay attention to a lot of different variables at once, but I've found that I'm much better at positioning.
So, what I do is pilot something fairly fast and maneuverable, but also tanky, and usually lots of PD. That way I can stick by my flagship and protect it from flanking.
Earlier today, I saw my flagship taking heavy damage up front, but its flux was almost maxed. The AI was moving in to take advantage, and I managed to save the situation by dropping my shields and quickly getting out in front where I raised my shields and took the fire while my flagship recovered.
I love stuff like that, and if I didn't pilot, it'd never happen (except on accident haha)