...i am on good terms with the pirates and neutral to pathers, everybody else is welcoming or higher
there is also currently no pirates raids or deep space pirate stations targeting my system
however there is pather activity on all of my colonies, but that only disrupts industries right?
Are you also friendly with the Pathers? Keep in mind that even the independents occasionally turn to piracy and attack what would otherwise be friendlies. This is why scavengers occasionally attack you despite being welcoming with the independents.
I think some Independents, Pathers, and Pirates will still attack your trade convoys even if you're friendly with them to simulate how loosely these organizations are put together.
Is your system in the core? What mods are you using? Are trade fleets being waylaid by Remnant fleets or scavengers?
AddendumEach of your colonies Pather Activity tags link to one or more Pather bases. These bases and their constituent fleets as well as fleets going to supply them are always hostile to you and your faction as far as I understand even if you're commissioned by the Pathers.