You can mouse over a resource, say supplies, and see what the tooltip says about consumption, bonuses or penalties. Then we can find out more about what's going on.
I suspect what might be going on is that player character's Industrial Planning skill decreases consumption by one, like it used to in the previous versions, but the same skill by Administrator's and AI core doesn't. If so this might be a bug with the Player's skill not being updated.
Edit: Quick test, yup this is indeed the case.