So it was pretty much my first thought to do something like this when I played this game, and I started on something, and then pretty much stopped because I have a short attention span. I managed to add three ships: the akira, nova, and defiant class ships, as well as a standard phaser, photon torpedo, and phaser cannon weapon set (the sprites for these are incredibly basic and slightly offset in placement). I tried doing some sound stuff for the phaser sound, but it ended up not sounding great mostly because I suck at sound. Also, they are all very over powered.
Basically, you start with a nova class, and you can buy the other two off of the hegemony station. OP: Feel free to use anything I've done here with your stuff.
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