Took the freedom of implementing a "test" mission with every working ship i could find in it, and have discovered ONE major issue; the insane amount of ordnance points on your ships.
While this allows greater freedom of customization, the sheer amount of weapons your ships can wield are staggering. Indeed, a Sovereign-class is easily capable of besting both an Onslaught and a Paragon (as a matter of fact, they can burst down a Payback-class with a single salvo, and that ship can take on almost three paragons simultaneously. Though i have a feeling this is because of the crystanite's natural high-explosive weakness.)
Other than that, great work, Luna! I see you are starting to get the hang of this.
Oh, and as SpiceRiceBowl said; the Claymore sprite seems to be corrupt, though i could not find out any specific reason.