Alrighty, got some more balance issues, mainly pertaining to fighters.
The Flores Attack Boat is batshit-OP - it has 2 B-37s and
2 Kinetic missile pods - good lord. They completely outshine every other fighters due to that one aspect. Sure, the Elite Fockers might have 4 B-37s, but all of the B-37s in the world simply can't stand up to the barrage of 6 Kinetic missiles that comes from the Flores wing. I'd suggest you change the wing entirely to take on more of a generalist Heavy Fighter role, light anti-ship with decent anti-fighter. Perhaps strap on a Hailstorm Mark 2 with a single fragmentation missile pod (a nerfed fragmenation missile pod, read on and you'll hear about that one when I talk about the Elite Fokker).
Also, the Evertsen wing could use a buff - it has just a Batavian Needler, B-37, and a kinetic missile pod, and with just 2 per wing, there's no point into getting them over the Flores, as they just have more firepower. I'd suggest that 2 Kinetic pods per fighter, so they have a purpose over the Flores wing (if the suggestion above is taken) to be better anti-shield fighters, somewhat like the underused Longbow from vanilla.
Finally, the odd mix between the Fokker and the Elite Fokker. I do understand that the Elite Fokker is supposed to be a straight-up upgrade over the regular Fokker, but it simply doesn't sit well with me. The regular Fokkers seem fine, like Talons - cheap and disposable. The Elite Fokkers are a different matter - I think it's because B-37s perform so badly (which is fine, as they're found all over Batavian ships as built-in weapons), and having 2 extra ones isn't going to help very much. Perhaps instead of 2 additional B-37s, the Elite Fokkers get a fragmentation missile pod added to them (nerfed, if possible, to fire just 2 frag missiles per volley).
The Bombers are pretty ok - the Soemba and the Fokker G1 both have their place in the world, with the Soemba being the better anti-ship bomber and the Fokker G1 being a (surprisingly) good bomber-hunter.
Those Aukes torpedoes, if you want to prevent that, might want to be classed as Strike weapons and then add a bit more omph to them to bring them more in line with the pair of bomb bays the Soemba has.