Bug report for you:
Stations are no longer upgrading. Certain stations are missing pieces: High Tech orbital station is missing the ablative armor module that goes in the gap between the shields. When replacing a station of one tech level with another station, that does not work. In cases where pirates/luddites build stations, they only ever have one module functioning. In cases where stations are destroyed, they remain destroyed.
I'm running it with: Console Commands 3.0, Nexerelin 0.9.5h, Graphics Lib, Magic Lib, Lazy Lib, Hyperdrive 1.1.0, and Second Wave Options 0.4.1 and it's replicable on my end. I can get screenshots showing where the sprite does not match the map graphic (map graphic is a true representation of the station as it appears in battles, I've spawned fleets to test how the stations appear in combat)
All in all, it's making me very sad because I love the mod. But it's incredibly challenging to face late game fleets with nothing but Orbital Stations defending everything.