It looks like several other people have had this issue, but nobody's got a solution yet, so I'll add my log and modlist to the pile.
Log
Spoiler
82889 [Thread-4] ERROR com.fs.starfarer.combat.CombatMain - java.lang.NullPointerException
java.lang.NullPointerException
at com.fs.starfarer.api.impl.combat.CRPluginImpl.applyMaxCRCrewModifiers(CRPluginImpl.java:48)
at com.fs.starfarer.campaign.fleet.FleetMember.updateStatsBasedOnCrew(Unknown Source)
at com.fs.starfarer.campaign.fleet.FleetMember.updateOnlyStatsThatCanRelyOnCROrCre w(Unknown Source)
at com.fs.starfarer.campaign.fleet.FleetData.syncIfNeeded(Unknown Source)
at com.fs.starfarer.campaign.fleet.FleetData.sort(Unknown Source)
at com.fs.starfarer.campaign.fleet.FleetData.sort(Unknown Source)
at com.fs.starfarer.campaign.fleet.CargoData.sort(Unknown Source)
at com.fs.starfarer.campaign.fleet.CargoData.sort(Unknown Source)
at com.fs.starfarer.api.impl.campaign.submarkets.BlackMarketPlugin.updateCargoPreP layerInteraction(BlackMarketPlugin.java:112)
at com.fs.starfarer.coreui.oOOo.<init>(Unknown Source)
at com.fs.starfarer.ui.newui.O0oO$3.actionPerformed(Unknown Source)
at com.fs.starfarer.ui.newnew.buttonPressed(Unknown Source)
at com.fs.starfarer.ui.I.Ò00000(Unknown Source)
at com.fs.starfarer.ui.I.processInput(Unknown Source)
at com.fs.starfarer.ui.O0Oo.o00000(Unknown Source)
at com.fs.starfarer.BaseGameState.traverse(Unknown Source)
at com.fs.state.AppDriver.begin(Unknown Source)
at com.fs.starfarer.combat.CombatMain.main(Unknown Source)
at com.fs.starfarer.StarfarerLauncher$1.run(Unknown Source)
at java.lang.Thread.run(Unknown Source)
Mods
Spoiler
Autosave
Blackrock Drive Yards
CombatAnalytics
Foundation of Borken
GraphicsLib
LazyLib
Leading Pip
Legacy of Arkgneisis
MagicLib
Ship and Weapon Pack
SkilledUp
SpeedUp
Starship Legends
Unknown Skies
Vayra's Sector (pre-split version)
Version Checker
Vesperon