Maybe you need to remove the Onslaught, i know Luddic Church was allied with Hegemony in 1st and 2nd AI War and War again Tri-tach and Persean but giving them an Onslought blueprint? i don't think Hegemony will do that, it's their main weapon again their enemy, since in lore Luddic already have Legion, maybe you should give Legion more Luddic characteristic like more Missile slot also it's more lore-friendly if you give these ship a debuff like Remanualized, so it's need more crew since Luddic Church doesn't trust semi-AI ship system so they remove them in cost of more crew requirement. Overall, i like this mod, and yes Luddic Church seem to weak, need some buff, maybe in lore they become more pacifist over the year but doesn't mean they're fangless right?