A few balance notes after some playtesting.
The Pigeon, a civilian ship, has superior flux dissipation than the Lasher, a military frigate. This combined with it's speed makes it an incredibly effective duelist and line frigate. A nerf to it's flux stats is needed, otherwise it is OP.
The (SAB) Tempest's phase cloak is 3 times as costly to activate and use than the shade and afflictor. This high flux cost is not offset by its combat performance, and should be reduced to ~200 from 375.
The Pawn Carrier costs more credits than and has the same supply cost as a Condor despite having half the fighter capability and being totally defenseless when caught. Considering it's apparent tech level and size a cost of ~15000 and a supply per day of 5 would be more sensible.
As a cosmetic change, the Wolfpup fighters seem high tech, and should have the high tech shields and engine plume.