Yes! I knew it. Go to the save file, open it with any text redactor, then find there your ship (give it unique name ingame, press ctrl+f in text redactor and write it there) and go to the part with hullmods. I find this:
<hM z="111634">
<st>phasefield</st>
<st>delicate</st>
<st>safetyremoval</st>
<st>rcsw_secondwave</st>
<st>efficiency_overhaul</st>
<st>solar_shielding</st>
<st>fluxdistributor</st>
<st>hardened_subsystems</st>
</hM>
<pM z="111635">
<st>rcsw_secondwave</st>
</pM>
So here is a safety removal, what didn't showup ingame
.
I bet you will find Ill-modifications there. You might even delete this string if you don't like it, but check description of lucifer it says - "somehow work". I think thats was intentionaly made unremovable by restoration in docks, because this is an extremely modded prototype after all.